Publications of A Zien

Sonnenburg, S.; Rätsch, G.; Henschel, S.; Widmer, C.; Behr, J.; Zien, A.; De Bona, F.; Binder, A.; Gehl, C.; Franc, V.: The SHOGUN Machine Learning Toolbox. Journal of Machine Learning Research 11, pp. 1799 - 1802 (2010)

Schweikert, G.; Behr, J.; Zien, A.; Zeller, G.; Ong, C.; Sonnenburg, S.; Rätsch, G.: mGene.web: a web service for accurate computational gene finding. Nucleic Acids Research (London) 37 (Supplement 2), pp. W312 - W316 (2009)

Zien, A.; Gebhard, P.; Fundel, K.; Aigner, T.: Phenotyping of Chondrocytes In Vivo and In Vitro Using cDNA Array Technology. Clinical Orthopaedics and Related Research 460, pp. 226 - 233 (2007)

Aigner, T.; Fundel, K.; Saas, J.; Gebhard, P.; Haag, J.; Weiss , T.; Zien, A.; Obermayr, F.; Zimmer, R.; Bartnik, E.: Large-Scale Gene Expression Profiling Reveals Major Pathogenetic Pathways of Cartilage Degeneration in Osteoarthritis. Arthritis and Rheumatism 54 (11), pp. 3533 - 3544 (2006)

Aigner, T.; McKenna, L.; Zien, A.; Fan , Z.; Gebhard, P.; Zimmer, R.: Gene expression profiling of serum- and interleukin-1β-stimulated primary human adult articular chondrocytes: A molecular analysis based on chondrocytes isolated from one donor. Cytokine 31 (3), pp. 227 - 240 (2005)

Schorle, C.; Finger, F.; Zien, A.; Block , J.; Gebhard, P.; Aigner, T.: Phenotypic characterization of chondrosarcoma-derived cell lines. Cancer Letters 226 (2), pp. 143 - 154 (2005)

Aigner, T.; Finger, F.; Zien, A.; Bartnik, E.: cDNA-Microarrays in der Knorpelforschung: Funktionale Genomik der Osteoarthrose. Zeitschrift für Orthopädie und ihre Grenzgebiete 142 (2), pp. 241 - 247 (2004)

Aigner, T.; Finger F, Zien, A.; Bartnik, E.: cDNA-Microarray Technology in Cartilage Research - Functional Genomics of Osteoarthritis [in German]. Zeitschrift für Orthopädie und ihre Grenzgebiete 142 (2), pp. 241 - 247 (2004)

Becker, A.; Chen, J.; Zien, A.; Sochivko, D.; Normann , S.; Schramm, J.; Elger, C.; Wiesler, O.; Blumcke, I.: Correlated stage- and subfield-associated hippocampal gene expression patterns in experimental and human temporal lobe epilepsy. European Journal of Neuroscience: European Neuroscience Association 18 (10), pp. 2792 - 2802 (2003)

Zien, A.; Fluck, J.; Zimmer, R.; Lengauer, T.: Microarrays: How Many Do You Need? Journal of Computational Biology 10 (3-4), pp. 653 - 667 (2003)

Chapelle, O.; Schölkopf, B.; Zien, A.: Semi-Supervised Learning. MIT Press, Cambridge, MA, USA (2006), 508 pp.

Chapelle, O.; Schölkopf, B.; Zien, A.: Analysis of Benchmarks. In: Semi-Supervised Learning, 21, pp. 377 - 393 (Eds. Chapelle, O.; Schölkopf, B.; Zien, A.). MIT Press, Cambridge, MA, USA (2006)

Chapelle, O.; Schölkopf, B.; Zien, A.: A Discussion of Semi-Supervised Learning and Transduction. In: Semi-Supervised Learning, 25, pp. 473 - 478 (Eds. Chapelle, O.; Schölkopf, B.; Zien, A.). MIT Press, Cambridge, MA, USA (2006)

Zien, A.: A primer on molecular biology. In: Kernel Methods in Computational Biology, pp. 3 - 34 (Eds. Schölkopf, B.; Tsuda, K.; Vert, J.-P.). MIT Press, Cambridge, MA, USA (2004)

Ong, C.; Zien, A.: An Automated Combination of Kernels for Predicting Protein Subcellular Localization. In: Algorithms in Bioinformatics: 8th International Workshop, WABI 2008, Karlsruhe, Germany, September 15-19, 2008, pp. 186 - 197 (Eds. Krandall, K.; Lagergren, J.). 8th Workshop on Algorithms in Bioinformatics (WABI 2008), Karlsruhe, Germany, September 15, 2008 - September 19, 2008. Springer, Berlin, Germany (2008)

Sonnenburg, S.; Zien, A.; Philips , P.; Rätsch, G.: POIMs: positional oligomer importance matrices: understanding support vector machine-based signal detectors. 16th Annual International Conference Intelligent Systems for Molecular Biology (ISMB 2008), Toronto, Canada, July 19, 2008 - July 23, 2008. Bioinformatics 24 (13), pp. i6 - i14 (2008)

Zien, A.; Brefeld, U.; Scheffer, T.: Transductive Support Vector Machines for Structured Variables. In: ICML '07: 24th International Conference on Machine Learning, pp. 1183 - 1190 (Ed. Ghahramani, Z.). 24th International Conference on Machine Learning (ICML 2007), Corvallis, OR, USA, June 20, 2007 - June 24, 2007. ACM Press, New York, NY, USA (2007)

Zien, A.; De Bona, F.; Ong, C.: Training and Approximation of a Primal Multiclass Support Vector Machine. In: XIIth International Conference on Applied Stochastic Models and Data Analysis (ASMDA 2007), 1 (Ed. Skiadas, C.). XIIth International Conference on Applied Stochastic Models and Data Analysis (ASMDA 2007), Chania, Greece, May 29, 2007 - June 01, 2007. (2007)

Zien, A.; Ong, C.: Multiclass Multiple Kernel Learning. In: ICML '07: 24th International Conference on Machine Learning, pp. 1191 - 1198 (Ed. Ghahramani, Z.). 24th International Conference on Machine Learning (ICML 2007), Corvallis, OR, USA, June 20, 2007 - June 24, 2007. ACM Press, New York, NY, USA (2007)

Sonnenburg, S.; Zien, A.; Rätsch, G.: ARTS: Accurate Recognition of Transcription Starts in Human. 14th International Conference on Intelligent Systems for Molecular Biology (ISMB 2006), Fortaleza, Brazil, August 06, 2006 - August 10, 2006. Bioinformatics 22 (14), H-56, pp. e472 - e480 (2006)