Publications of K Tsuda

Rätsch, G.; Tsuda, K.: The v-Trick for Image Reconstruction. In First Mathematical Programming Society International Conference on Continuous Optimization (ICCOPT I), MM 4, p. 55. First Mathematical Programming Society International Conference on Continuous Optimization (ICCOPT I), Troy, NY, USA, August 02, 2004 - August 04, 2004. (2004)

Tsuda, K.: Marginalized kernels between labeled graphs. In Workshop "Kernel Methods in Bioinformatics" 2003. Workshop "Kernel Methods in Bioinformatics" 2003, Berlin, Germany, April 14, 2003. (2003)

Borgwardt, K.; Tsuda, K.; Vishwanathan, S.; Yan, X.: Structured Input - Structured Output. NIPS 2008 Workshop: Structured Input - Structured Output (NIPS SISO 2008) , Whistler, BC, Canada (2008)

Tsuda, K.: Enumeration of Condition-Specific Dense Modules in Protein Interaction Networks. Joint Bioinformatics Education Program: Kyoto University and University of Tokyo, Kyoto, Japan (2008)

Saigo, H.; Hattori, M.; Tsuda, K.: Reaction graph kernels for discovering missing enzymes in the plant secondary metabolism. NIPS 2007 Workshop on Machine Learning in Computational Biology (MLCB 2007), Whistler, BC, Canada (2007)

Tsuda, K.; Saigo, H.; Nowozin, S.; Kudo , T.; Uno, T.: Mathematical Programming Methods for Learning from Structured Data: Applications to Molecular QSAR Analysis, HIV Drug Resistance Prediction, and Image Categorisation. Joint Bioinformatics Education Program: Kyoto University and University of Tokyo, Kyoto, Japan (2007)

Saigo, H.; Kadowaki , T.; Kudo, T.; Tsuda, K.: Graph boosting for molecular QSAR analysis. NIPS 2006 Workshop on New Problems and Methods in Computational Biology (MLCB 2006), Vancouver, BC, Canada (2006)

Steinke, F.; Seeger, M.; Tsuda, K.: Experimental Design for Efficient Identification of Gene Regulatory Networks using Sparse Bayesian Models. International Workshop on Probabilistic Modelling in Computational Biology (PMCB 2007), Wien, Austria (2006)

Georgii, E.; Dietmann , S.; Uno, T.; Pagel, P.; Tsuda, K.: Mining expression-dependent modules in the human interaction network. Third International Society for Computational Biology (ISCB), Student Council Symposium at the Fifteenth Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Wien, Austria (2007)

Saigo, H.; Uno, T.; Tsuda, K.: Mining complex genotypic features for predicting HIV-1 drug resistance. 15th Annual International Conference on Intelligent Systems for Molecular Biology & 6th European Conference on Computational Biology (ISMB/ECCB 2007), Wien, Austria (2007)

Tsuda, K.; Noble, W.: Learning kernels from biological networks by maximizing entropy. Eighth Annual International Conference on Computational Molecular Biology (RECOMB 2004), San Diego, CA, USA (2004)

Nowozin, S.; Tsuda, K.: Frequent Subgraph Retrieval in Geometric Graph Databases (Technical Report of the Max Planck Institute for Biological Cybernetics, 180). Max Planck Institute for Biological Cybernetics, Tübingen, Germany (2008), 13 pp.

Tsuda, K.; Rätsch, G.: Image Reconstruction by Linear Programming (Technical Report of the Max Planck Institute for Biological Cybernetics, 118). Max Planck Institute for Biological Cybernetics, Tübingen, Germany (2003), 12 pp.