Publications of F Sobczak

Takahashi, K.; Sobczak, F.; Pais-Roldán, P.; Yu, X.: Characterizing brain stage-dependent pupil dynamics based on lateral hypothalamic activity. Cerebral Cortex Epub ahead, bhad309 (2023)

Grandjean, J.; Desrosiers-Gregoire, G.; Anckaerts, C.; Angeles-Valdez, D.; Ayad, F.; Barrière, D.; Blockx, I.; Bortel, A.; Broadwater, M.; Cardoso, B. et al.; Célestine, M.; Chavez-Negrete, J.; Choi, S.; Christiaen, E.; Clavijo, P.; Colon-Perez, L.; Cramer, S.; Daniele, T.; Dempsey, E.; Diao, Y.; Doelemeyer, A.; Dopfel, D.; Dvořáková, L.; Falfán-Melgoza, C.; Fernandes, F.; Fowler, C. F.; Fuentes-Ibañez, A.; Garin, C.; Gelderman, E.; Golden, C.; Guo, C.; Henckens, M.; Hennessy, L.; Herman , P.; Hofwijks, N.; Horien, C.; Ionescu, T.; Jones, J.; Kaesser, J.; Kim, E.; Lambers, H.; Lazari, A.; Lee, S.; Lillywhite, A.; Liu, Y.; Liu, Y.; López-Castro, A.; López-Gil , X.; Ma, Z.; MacNicol, E.; Madularu, D.; Mandino, F.; Marciano, S.; McAuslan, M.; McCunn, P.; McIntosh, A.; Meng, X.; Meyer-Baese, L.; Missault, S.; Moro, F.; Naessens, D.; Nava-Gomez, L.; Nonaka, H.; Ortiz, J.; Paasonen, J.; Pais-Roldán, P.; Peeters, L.; Pereira, M.; Perez, P. D.; Pompilus, M.; Prior, M.; Rakhmatullin, R.; Reimann, H.; Reinwald, J.; Triana Del Rio, R.; Rivera-Olvera, A.; Ruiz-Pérez, D.; Russo, G.; Rutten, T.; Ryoke, R.; Sack, M.; Salvan, P.; Sanganahalli, B.; Schroeter, A.; Seewoo , B.; Selingue, E.; Seuwen, A.; Shi, B.; Sirmpilatze, N.; Smith, J.; Smith, C.; Sobczak, F.; Stenroos, P.; Straathof, M.; Strobelt, S.; Sumiyoshi, A.; Takahashi, K.; Torres-García, M.; Tudela, R.; van den Berg, M.; van der Marel, K.; van Hout, A.; Vertullo, R.; Vidal, B.; Vrooman, R.; Wang, X.; Wank, I.; Watson, D.; Yin, T.; Zhang, Y.; Zurbruegg, S.; Achard, S.; Alcauter, S.; Auer, D.; Barbier, E.; Baudewig, J.; Beckmann, C.; Beckmann, N.; Becq, G.; Blezer, E.; Bolbos, R.; Boretius, S.; Bouvard, S.; Budinger, E.; Buxbaum, J.; Cash, D.; Chapman, V.; Chuang, K.-H.; Ciobanu, L.; Coolen, B.; Dalley, J.; Dhenain, M.; Dijkhuizen, R.; Esteban, O.; Faber, C.; Febo, M.; Feindel, K.; Forloni, G.; Fouquet, J.; Garza-Villarreal, E.; Gass, N.; Glennon, J.; Gozzi, A.; Gröhn, O.; Harkin, A.; Heerschap, A.; Helluy, X.; Herfert , K.; Heuser, A.; Homberg, J.; Houwing, D.; Hyder, F.; Ielacqua, G.; Jelescu, I.; Johansen-Berg, H.; Kaneko, G.; Kawashima, R.; Keilholz, S.; Keliris, G.; Kelly, C.; Kerskens, C.; Khokhar, J.; Kind, P.; Langlois, J.-B.; Lerch, J.; López-Hidalgo, M.; Manahan-Vaughan, D.; Marchand, F.; Mars, R.; Marsella, G.; Micotti , E.; Muñoz-Moreno , E.; Near, J.; Niendorf, T.; Otte, W.; Pais-Roldán, P.; Pan , W.-J.; Prado-Alcalá, R.; Quirarte, G.; Rodger , J.; Rosenow, T.; Sampaio-Baptista, C.; Sartorius, A.; Sawiak, S.; Scheenen, T.; Shemesh; Shih, Y.-Y. I.; Shmuel, A.; Soria, G.; Stoop, R.; Takahashi, K.; Thompson, G.; Till, S.; Todd, N.; Van Der Linden, A.; van der Toorn, A.; van Tilborg, G.; Vanhove, C.; Veltien, A.; Verhoye, M.; Wachsmuth, L.; Weber-Fahr, W.; Wenk , P.; Yu, X.; Zerbi , V.; Zhang , N.; Zhang, B.; Zimmer, L.; Devenyi, G.; Chakravarty, M.; Hess, A.: Author Correction: A consensus protocol for functional connectivity analysis in the rat brain. Nature Neuroscience 26 (6), pp. 1127 - 1128 (2023)

Grandjean, J.; Desrosiers-Gregoire, G.; Anckaerts, C.; Angeles-Valdez, D.; Ayad, F.; Barrière, D.; Blockx, I.; Bortel, A.; Broadwater, M.; Cardoso, B. et al.; Célestine, M.; Chavez-Negrete, J.; Choi, S.; Christiaen, E.; Clavijo, P.; Colon-Perez, L.; Cramer, S.; Daniele, T.; Dempsey, E.; Diao, Y.; Doelemeyer, A.; Dopfel, D.; Dvořáková, L.; Falfán-Melgoza, C.; Fernandes, F.; Fowler, C. F.; Fuentes-Ibañez, A.; Garin, C.; Gelderman, E.; Golden, C.; Guo, C.; Henckens, M.; Hennessy, L.; Herman , P.; Hofwijks, N.; Horien, C.; Ionescu, T.; Jones, J.; Kaesser, J.; Kim, E.; Lambers, H.; Lazari, A.; Lee, S.; Lillywhite, A.; Liu, Y.; Liu, Y.; López-Castro, A.; López-Gil , X.; Ma, Z.; MacNicol, E.; Madularu, D.; Mandino, F.; Marciano, S.; McAuslan, M.; McCunn, P.; McIntosh, A.; Meng, X.; Meyer-Baese, L.; Missault, S.; Moro, F.; Naessens, D.; Nava-Gomez, L.; Nonaka, H.; Ortiz, J.; Paasonen, J.; Pais-Roldán, P.; Peeters, L.; Pereira, M.; Perez, P. D.; Pompilus, M.; Prior, M.; Rakhmatullin, R.; Reimann, H.; Reinwald, J.; Triana Del Rio, R.; Rivera-Olvera, A.; Ruiz-Pérez, D.; Russo, G.; Rutten, T.; Ryoke, R.; Sack, M.; Salvan, P.; Sanganahalli, B.; Schroeter, A.; Seewoo , B.; Selingue, E.; Seuwen, A.; Shi, B.; Sirmpilatze, N.; Smith, J.; Smith, C.; Sobczak, F.; Stenroos, P.; Straathof, M.; Strobelt, S.; Sumiyoshi, A.; Takahashi, K.; Torres-García, M.; Tudela, R.; van den Berg, M.; van der Marel, K.; van Hout, A.; Vertullo, R.; Vidal, B.; Vrooman, R.; Wang, X.; Wank, I.; Watson, D.; Yin, T.; Zhang, Y.; Zurbruegg, S.; Achard, S.; Alcauter, S.; Auer, D.; Barbier, E.; Baudewig, J.; Beckmann, C.; Beckmann, N.; Becq, G.; Blezer, E.; Bolbos, R.; Boretius, S.; Bouvard, S.; Budinger, E.; Buxbaum, J.; Cash, D.; Chapman, V.; Chuang, K.-H.; Ciobanu, L.; Coolen, B.; Dalley, J.; Dhenain, M.; Dijkhuizen, R.; Esteban, O.; Faber, C.; Febo, M.; Feindel, K.; Forloni, G.; Fouquet, J.; Garza-Villarreal, E.; Gass, N.; Glennon, J.; Gozzi, A.; Gröhn, O.; Harkin, A.; Heerschap, A.; Helluy, X.; Herfert , K.; Heuser, A.; Homberg, J.; Houwing, D.; Hyder, F.; Ielacqua, G.; Jelescu, I.; Johansen-Berg, H.; Kaneko, G.; Kawashima, R.; Keilholz, S.; Keliris, G.; Kelly, C.; Kerskens, C.; Khokhar, J.; Kind, P.; Langlois, J.-B.; Lerch, J.; López-Hidalgo, M.; Manahan-Vaughan, D.; Marchand, F.; Mars, R.; Marsella, G.; Micotti , E.; Muñoz-Moreno , E.; Near, J.; Niendorf, T.; Otte, W.; Pais-Roldán, P.; Pan , W.-J.; Prado-Alcalá, R.; Quirarte, G.; Rodger , J.; Rosenow, T.; Sampaio-Baptista, C.; Sartorius, A.; Sawiak, S.; Scheenen, T.; Shemesh; Shih, Y.-Y. I.; Shmuel, A.; Soria, G.; Stoop, R.; Takahashi, K.; Thompson, G.; Till, S.; Todd, N.; Van Der Linden, A.; van der Toorn, A.; van Tilborg, G.; Vanhove, C.; Veltien, A.; Verhoye, M.; Wachsmuth, L.; Weber-Fahr, W.; Wenk , P.; Yu, X.; Zerbi , V.; Zhang , N.; Zhang, B.; Zimmer, L.; Devenyi, G.; Chakravarty, M.; Hess, A.: A consensus protocol for functional connectivity analysis in the rat brain. Nature Neuroscience 26 (4), pp. 673 - 681 (2023)

Choi, S.; Zeng, H.; Chen, Y.; Sobczak, F.; Qian, C.; Yu, X.: Laminar-specific functional connectivity mapping with multi-slice line-scanning fMRI. Cerebral Cortex 32 (20), pp. 4492 - 4501 (2022)

Grandjean, J.; Desrosiers-Gregoire, G.; Anckaerts, C.; Angeles-Valdez, D.; Ayad, F.; Barrière, D.; Blockx, I.; Bortel, A.; Broadwater, M.; Cardoso, B. et al.; Célestine, M.; Chavez-Negrete, J.; Choi, S.; Christiaen, E.; Clavijo, P.; Colon-Perez, L.; Cramer, S.; Daniele, T.; Dempsey, E.; Diao, Y.; Doelemeyer, A.; Dopfel, D.; Dvořáková, L.; Falfán-Melgoza, C.; Fernandes, F.; Fowler, C.; Fuentes-Ibañez, A.; Garin, C.; Gelderman, E.; Golden, C. E.; Guo, C. C.; Henckens, M. J.; Hennessy, L. A.; Herman, P.; Hofwijks, N.; Horien, C.; Ionescu, T. M.; Jones, J.; Kaesser, J.; Kim, E.; Lambers, H.; Lazari, A.; Lee, S.-H.; Lillywhite, A.; Liu, Y.; Liu, Y. Y.; López-Castro, A.; López-Gil, X.; Ma, Z.; MacNicol, E.; Madularu, D.; Mandino, F.; Marciano, S.; McAuslan, M. J.; McCunn, P.; McIntosh, A.; Meng, X.; Meyer-Baese, L.; Missault, S.; Moro, F.; Naessens, D.; Nava-Gomez, L. J.; Nonaka, H.; Ortiz, J. J.; Paasonen, J.; Peeters, L. M.; Pereira, M.; Perez, P. D.; Pompilus, M.; Prior, M.; Rakhmatullin, R.; Reimann, H. M.; Reinwald, J.; de Rio, R. T.; Rivera-Olvera, A.; Ruiz-Pérez, D.; Russo, G.; Rutten, T. J.; Ryoke, R.; Sack, M.; Salvan, P.; Sanganahalli, B. G.; Schroeter, A.; Seewoo, B. J.; Selingue, E.; Seuwen, A.; Shi, B.; Sirmpilatze, N.; Smith, J. A.; Smith, C.; Sobczak, F.; Stenroos, P. J.; Straathof, M.; Strobelt, S.; Sumiyoshi, A.; Takahashi, K.; Torres-Garcia, M.; Tudela, R.; van den Berg, M.; van der Marel, K.; van Hout, A. T.; Vertullo, R.; Vidal, B.; Vrooman, R. M.; Wang, V. X.; Wank, I.; Watson, D. J.; Yin, T.; Zhang, Y.; Zurbruegg, S.; Achard, S.; Alcauter, S.; Auer, D. P.; Barbier, E. L.; Baudewig, J.; Beckmann, C. F.; Beckmann, N.; Becq, G. J.; Blezer, E. L.; Bolbos, R.; Boretius, S.; Bouvard, S.; Budinger, E.; Buxbaum, J. D.; Cash, D.; Chapman, V.; Chuang, K.-H.; Ciobanu, L.; Coolen, B.; Dalley, J. W.; Dhenain, M.; Dijkhuizen, R. M.; Esteban, O.; Faber, C.; Febo, M.; Feindel, K. W.; Forloni, G.; Fouquet, J.; Garza-Villarreal, E. A.; Gass, N.; Glennon, J. C.; Gozzi, A.; Gröhn, O.; Harkin, A.; Heerschap, A.; Helluy, X.; Herfert, K.; Heuser, A.; Homberg, J. R.; Houwing, D. J.; Hyder, F.; Ielacqua, G. D.; Jelescu, I. O.; Johansen-Berg, H.; Kaneko, G.; Kawashima, R.; Keilholz, S. D.; Keliris, G. A.; Kelly, C.; Kerskens, C.; Khokhar, J. Y.; Kind, P. C.; Langlois, J.-B.; Lerch, J. P.; López-Hidalgo, M. A.; Manahan-Vaughan, D.; Marchand, F.; Mars, R. B.; Marsella, G.; Micotti, E.; Muñoz-Moreno, E.; Near, J.; Niendorf, T.; Otte, W. M.; Pais, P.; Pan, W.-J.; Prado-Alcalá, R. A.; Quirarte, G. L.; Rodger, J.; Rosenow, T.; Baptista, C. S.; Sartorius, A.; Sawiak, S. J.; Scheenen, T. W.; Shemesh, N.; Shih, Y.-Y. I.; Shmuel, A.; Soria, G.; Stoop, R.; Thompson, G. J.; Till, S. M.; Todd, N.; Van Der Linden, A.; van der Toorn, A.; van Tilborg, G. A.; Vanhove, C.; Veltien, A.; Verhoye, M.; Wachsmuth, L.; Weber-Fahr, W.; Wenk, P.; Yu, X.; Zerbi, V.; Zhang, N.; Zhang, B. B.; Zimmer, L.; Devenyi, G. A.; Chakravarty, M. M.; Hess, A.: StandardRat: A multi-center consensus protocol to enhance functional connectivity specificity in the rat brain. (submitted)

Sobczak, F.; Pais-Roldán, P.; Takahashi, K.; Yu, X.: Decoding the brain state-dependent relationship between pupil dynamics and resting state fMRI signal fluctuation. eLife 10, e68980 (2021)

Sobczak, F.; He, Y.; Sejnowski, T.; Yu, X.: Predicting the fMRI Signal Fluctuation with Recurrent Neural Networks Trained on Vascular Network Dynamics. Cerebral Cortex 31 (2), pp. 826 - 844 (2021)

Chen, Y.; Sobczak, F.; Pais-Roldán, P.; Schwarz, C.; Koretsky, A.; Yu, X.: Mapping the Brain-Wide Network Effects by Optogenetic Activation of the Corpus Callosum. Cerebral Cortex 30 (11), pp. 5885 - 5898 (2020)

Pais-Roldán, P.; Takahashi, K.; Sobczak, F.; Chen, Y.; Zhao, X.; Zeng, H.; Jiang, Y.; Yu, X.: Indexing brain state-dependent pupil dynamics with simultaneous fMRI and optical fiber calcium recording. Proceedings of the National Academy of Sciences of the United States of America 117 (12), pp. 6875 - 6882 (2020)

Chen, X.-M.; Sobczak, F.; Chen, Y.; Qian, C.; Lu, Z.; Ayata, C.; Logothetis, N.; Yu, X.: Mapping Optogenetically Driven Single-Vessel fMRI with Concurrent Neuronal Calcium Recordings in the Rat Hippocampus. Nature Communications 10 (1), 5239 (2019)

Takahashi, K.; Sobczak, F.; Pais-Roldán, P.; Yu, X.: Identifying functional correlations between lateral hypothalamus and cingulate cortex underlying brain state-dependent pupil dynamics. In 2021 ISMRM & SMRT Annual Meeting & Exhibition (ISMRM 2021), 0576. 2021 ISMRM & SMRT Annual Meeting & Exhibition (ISMRM 2021), May 15, 2021 - May 20, 2021. (2021)

Chen, Y.; Sobczak, F.; Pais, P.; Schwarz, C.; Koretsky, A.; Yu, X.: Integration of thalamocortical and callosal inputs by optogenetic activation of the rat corpus callosum (CC) with MRI-guided robotic arm (MgRA). In 4th Summer Conference of the European Society for Molecular Imaging: Hot Topics in Imaging Technology (TOPIM TECH 2019): Resolution Revolution, T-05. 4th Summer Conference of the European Society for Molecular Imaging: Hot Topics in Imaging Technology (TOPIM TECH 2019): Resolution Revolution, Chania, Greece, July 01, 2019 - July 06, 2019. (2019)

Zeng, H.; Choi, S.; Sobczak, F.; Rosen, B.; Yu, X.: Concurrent intracellular calcium recordings with laminar fMRI mapping. In ISMRM 27th Annual Meeting & Exhibition, 0611. 27th Annual Meeting and Exhibition of the International Society for Magnetic Resonance in Medicine (ISMRM 2019), Montréal, QC, Canada, May 11, 2019 - May 16, 2019. (2019)

Chen, X.; Sobczak, F.; Chen, Y.; Yu, X.: Identify the neurovascular coupling efficacy of long-term depolarization or seizer-like events in the hippocampus with optogenetic single-vessel fMRI. In Joint Annual Meeting ISMRM-ESMRMB 2018, 0181. Joint Annual Meeting ISMRM-ESMRMB 2018, Paris, France. (2018)

Sobczak, F.; He, Y.; Yu, X.: Predict the slow oscillation of the single-vessel resting-state fMRI signal of rats and humans with echo state networks. In Joint Annual Meeting ISMRM-ESMRMB 2018, 0436. Joint Annual Meeting ISMRM-ESMRMB 2018, Paris, France. (2018)

Takahashi, K.; Sobczak, F.; Yu, X.: Investigating the brain state and pupil dynamic modulation by frequency-dependent optogenetic regulation of the lateral hypothalamus. 50th Annual Meeting of the Society for Neuroscience (Neuroscience 2021) (2021)

Chen, Y.; Sobczak, F.; Pais Roldán, P.; Schwarz, C.; Koretsky, A.; Yu, X.: Mapping the brain-wide network effects by optogenetic activation of the corpus callosum with an MRI-guided robotic arm. 2020 ISMRM & SMRT Virtual Conference & Exhibition (2020)

Sobczak, F.; He, Y.; Sejnowski, T.; Yu, X.: Decoupling the default mode network and global state oscillation by neural network-based prediction of the fMRI signal fluctuation. 2020 ISMRM & SMRT Virtual Conference & Exhibition (2020)

Sobczak, F.; Pais-Roldán, P.; Zhao, X.; Yu, X.: Predicting the brain state index, pupil dynamics, with rs-fMRI signal-trained models. 2020 ISMRM & SMRT Virtual Conference & Exhibition (2020)

Sobczak, F.; Yu, X.: Echo state network prediction of intrinsic signals' slow fluctuations of rat and human cortical vasculature. 13th Annual Meeting of the European Society for Molecular Imaging (EMIM 2018), San Sebastian, Spain (2018)