Publications of CS Ong

Journal Article (8)

1.
Journal Article
Schweikert, G.; Zeller, G.; Behr, J.; Dieterich, C.; Ong, C.; Philips, P.; De Bona, F.; Hartmann, L.; Bohlen, A.; Krüger, N. et al.; Sonnenburg, S.; Rätsch, G.: mGene: Accurate SVM-based gene finding with an application to nematode genomes. Genome Research 19 (11), pp. 2133 - 2143 (2009)
2.
Journal Article
Schweikert, G.; Behr, J.; Zien, A.; Zeller, G.; Ong, C.; Sonnenburg, S.; Rätsch, G.: mGene.web: a web service for accurate computational gene finding. Nucleic Acids Research (London) 37 (Supplement 2), pp. W312 - W316 (2009)
3.
Journal Article
Ben-Hur, A.; Ong, C.; Sonnenburg, S.; Schölkopf, B.; Rätsch, G.: Support Vector Machines and Kernels for Computational Biology. PLoS Computational Biology 4 (10), pp. 1 - 10 (2008)
4.
Journal Article
Sonnenburg, S.; Braun, M.; Ong, C.; Bengio, S.; Bottou, L.; Holmes , G.; LeCun, Y.; Müller, K.-R.; Pereira, F.; Rasmussen, C. et al.; Rätsch, G.; Schölkopf, B.; Smola, A.; Vincent, P.; Weston, J.; Williamson, R.: The Need for Open Source Software in Machine Learning. The Journal of Machine Learning Research 8, pp. 2443 - 2466 (2007)
5.
Journal Article
Schulze, U.; Hepp, B.; Ong, C.; Rätsch, G.: PALMA: mRNA to Genome Alignments using Large Margin Algorithms. Bioinformatics 23 (15), pp. 1892 - 1900 (2007)
6.
Journal Article
Ong, C.; Smola, A.; Williamson, R.: Learning the Kernel with Hyperkernels. The Journal of Machine Learning Research 6, pp. 1043 - 1071 (2005)
7.
Journal Article
Borgwardt, K.; Ong, C.; Schönauer, S.; Vishwanathan , S.; Smola, A.; Kriegel, H.-P.: Protein function prediction via graph kernels. Bioinformatics 21 (Supplement 1), pp. i47 - i56 (2005)
8.
Journal Article
Ong, C.: Knowledge Discovery in Databases: An Information Retrieval Perspective. Malaysian Journal of Computer Science 13 (2), pp. 54 - 63 (2000)

Conference Paper (10)

9.
Conference Paper
Dezfouli, A.; Ashtiani, H.; Ghattas, O.; Nock, R.; Dayan, P.; Ong, C.: Disentangled behavioural representations. In: Advances in Neural Information Processing Systems 32, pp. 2243 - 2252 (Eds. Wallach, H.; Larochelle, H.; Beygelzimer , A.; d'Alché-Buc, F.; Fox, E. et al.). Thirty-third Conference on Neural Information Processing Systems (NeurIPS 2019), Vancouver, Canada, December 09, 2019 - December 13, 2019. Curran, Red Hook, NY, USA (2020)
10.
Conference Paper
Dinuzzo, F.; Ong, C.; Gehler, P.; Pillonetto, G.: Learning output kernels with block coordinate descent. In: 28th International Conference on Machine Learning (ICML 2011), pp. 49 - 56 (Eds. Getoor, L.; Scheffer, T.). 28th International Conference on Machine Learning (ICML 2011), Bellevue, WA, USA. International Machine Learning Society, Madison, WI, USA (2011)
11.
Conference Paper
Canu, S.; Ong, C.; Mary, X.: Splines with non positive kernels. In: More Progresses in Analysis, pp. 163 - 173 (Eds. Begehr, H.; Nicolosi, F.). 5th International ISAAC Congress 2009, Catania, Italy, July 25, 2005 - July 30, 2005. World Scientific, Singapore (2009)
12.
Conference Paper
Ong, C.; Zien, A.: An Automated Combination of Kernels for Predicting Protein Subcellular Localization. In: Algorithms in Bioinformatics: 8th International Workshop, WABI 2008, Karlsruhe, Germany, September 15-19, 2008, pp. 186 - 197 (Eds. Krandall, K.; Lagergren, J.). 8th Workshop on Algorithms in Bioinformatics (WABI 2008), Karlsruhe, Germany, September 15, 2008 - September 19, 2008. Springer, Berlin, Germany (2008)
13.
Conference Paper
Ong, C.; Hartmann, L.; Bohnert, R.; Krüger , N.; Bohlen, A.; Rätsch, G.: Bootstrapping the alternative splicing annotation of newly sequenced genomes. In: Alternative Splicing: Special Interest Group Meeting (AS-SIG) at ISMB 2007, pp. 33 - 35. Alternative Splicing: Special Interest Group Meeting (AS-SIG) at ISMB 2007, Wien, Austria, July 19, 2007 - July 20, 2007. (2007)
14.
Conference Paper
Zien, A.; Bona, F.; Ong, C.: Training and Approximation of a Primal Multiclass Support Vector Machine. In: XIIth International Conference on Applied Stochastic Models and Data Analysis (ASMDA 2007), pp. 1 - 8 (Ed. Skiadas, C.). XIIth International Conference on Applied Stochastic Models and Data Analysis (ASMDA 2007), Chania, Greece, May 29, 2007 - June 01, 2007. (2007)
15.
Conference Paper
Zien, A.; Ong, C.: Multiclass Multiple Kernel Learning. In: ICML '07: 24th International Conference on Machine Learning, pp. 1191 - 1198 (Ed. Ghahramani, Z.). 24th International Conference on Machine Learning (ICML 2007), Corvallis, OR, USA, June 20, 2007 - June 24, 2007. ACM Press, New York, NY, USA (2007)
16.
Conference Paper
Rätsch, G.; Hepp , B.; Schulze , U.; Ong, C.: PALMA: Perfect Alignments using Large Margin Algorithms. In: German Conference on Bioinformatics 2006 (GCB 2006), pp. 104 - 113 (Eds. Huson, D.; Kohlbacher, O.; Lupas, A.; Nieselt, K.; Zell, A.). German Conference on Bioinformatics (GCB 2006), Tübingen, Germany, September 19, 2006 - September 22, 2006. Gesellschaft für Informatik, Bonn, Germany (2006)
17.
Conference Paper
Ong, C.; Mary , X.; Cnu, S.; Smola, A.: Learning with Non-Positive Kernels. In: ICML '04: Twenty-First International Conference on Machine Learning, 81, pp. 639 - 646 (Eds. Greiner, R.; Schuurmans, D.). Twenty-First International Conference on Machine Learning (ICML 2004), Banff, Canada, July 04, 2004 - July 08, 2004. ACM Press, New York, NY, USA (2004)
18.
Conference Paper
Ong, C.; Smola, A.; Williamson, R.: Hyperkernels. In: Advances in Neural Information Processing Systems 15, pp. 495 - 502 (Eds. Becker, S.; Thrun, S.; Obermayer, K.). Sixteenth Annual Conference on Neural Information Processing Systems (NIPS 2002), Vancouver, BC, Canada, December 09, 2002 - December 14, 2002. MIT Press, Cambridge, MA, USA (2003)

Meeting Abstract (3)

19.
Meeting Abstract
Rätsch, G.; Sonnenburg, S.; Ong, C.: Support Vector Machines and Kernels for Computational Biology. In 17th Annual International Conference on Intelligent Systems for Molecular Biology and 8th European Conference on Computational Biology (ISMB/ECCB 2009), AM3. 17th Annual International Conference on Intelligent Systems for Molecular Biology and 8th European Conference on Computational Biology (ISMB/ECCB 2009), Stockholm, Sweden, June 27, 2009 - July 02, 2009. (2009)
20.
Meeting Abstract
Schweikert, G.; Zeller , G.; Zien, A.; Behr, J.; Sonnenburg, S.; Philips , P.; Ong, C.; Rätsch, G.: mGene: A Novel Discriminative Gene Finder. In 2008 Topics Meeting: Worm Genomics and Systems Biology. 2008 Topics Meeting: Worm Genomics and Systems Biology, Cambridge, MA, USA, July 24, 2008 - July 25, 2008. (2008)
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