Publications of H Dinkel

Journal Article (17)

1.
Journal Article
Gouw, M.; Michael, S.; Sámano-Sánchez , H.; Kumar, M.; Zeke, A.; Lang, B.; Bely, B.; Chemes, L.; Davey, N.; Deng, Z. et al.; Diella, F.; Gürth, C.-M.; Huber, A.-K.; Kleinsorg, S.; Schlegel , L.; Palopoli , N.; Roey, K.; Altenberg, B.; Reményi , A.; Dinkel, H.; Gibson, T.: The eukaryotic linear motif resource: 2018 update. Nucleic Acids Research (London) 46 (D1), pp. D428 - D434 (2018)
2.
Journal Article
Gouw, M.; Sámano-Sánchez, H.; Van Roey, K.; Diella, F.; Gibson, T.; Dinkel, H.: Exploring Short Linear Motifs Using the ELM Database and Tools. Current Protocols in Bioinformatics 58 (1), pp. 8.22.1 - 8.22.35 (2017)
3.
Journal Article
Dinkel, H.; Van Roey, K.; Michael, S.; Kumar, M.; Uyar, B.; Altenberg, B.; Milchevskaya, V.; Schneider, M.; Kühn, H.; Behrendt, A. et al.; Dahl, S.; Damerell, V.; Diebel, S.; Kalman, S.; Klein, S.; Knudsen, A.; Mäder, C.; Merrill, S.; Staudt, A.; Thiel, V.; Welti, L.; Davey, N.; Diella, F.; Gibson, T.: ELM 2016: Data update and new functionality of the eukaryotic linear motif resource. Nucleic Acids Research (London) 44 (D1), pp. 294 - 300 (2016)
4.
Journal Article
Gibson, T.; Dinkel, H.; Van Roey, K.; Diella, F.: Experimental detection of short regulatory motifs in eukaryotic proteins: tips for good practice as well as for bad. Cell Communication and Signaling 13, 42, pp. 1 - 15 (2015)
5.
Journal Article
Budd, A.; Dinkel, H.; Corpas, M.; Fuller, J.; Rubinat, L.; Devos, D.; Khoueiry, P.; Förstner, K.; Georgatos, F.; Rowland, F. et al.; Sharan, M.; Binder, J.; Grace, T.; Traphagen, K.; Gristwood, A.; Wood, N.: Ten Simple Rules for Organizing an Unconference. PLoS Computational Biology 11 (1), pp. 1 - 8 (2015)
6.
Journal Article
Aleksic, J.; Alexa, A.; Attwood, T.; Hong, N.; Dahlö, M.; Davey, R.; Dinkel, H.; Förstner, K.; Grigorov, I.; Hériché, J.-K. et al.; Lahti, L.; MacLean, D.; Markie, M.; Molloy, J.; Schneider, M.; Scott, C.; Smith-Unna, R.; Vieira, B.: An Open Science Peer Review Oath. Faculty of 1000 Research 3, 271, pp. 1 - 17 (2014)
7.
Journal Article
Uyar, B.; Weatheritt, R.; Dinkel, H.; Davey, N.; Gibson, T.: Proteome-wide analysis of human disease mutations in short linear motifs: neglected players in cancer? Molecular BioSystems 2014 (10), pp. 2626 - 2642 (2014)
8.
Journal Article
Van Roey, K.; Uyar, B.; Weatheritt, R.; Dinkel, H.; Seiler, M.; Budd, A.; Gibson, T.; Davey, N.: Short Linear Motifs: Ubiquitous and Functionally Diverse Protein Interaction Modules Directing Cell Regulation. Chemical Reviews 114 (13), pp. 6733 - 6778 (2014)
9.
Journal Article
Dinkel, H.; Van Roey, K.; Michael, S.; Davey, N.; Weatheritt, R.; Born, D.; Speck, T.; Krüger, D.; Grebnev, G.; Kuban, M. et al.; Strumillo, M.; Uyar, B.; Budd, A.; Altenberg, B.; Seiler, M.; Chemes, L.; Glavina, J.; Sánchez, I.; Diella, F.; Gibson, T.: The eukaryotic linear motif resource ELM: 10 years and counting. Nucleic Acids Research (London) 42 (D1), pp. D259 - D266 (2013)
10.
Journal Article
Fuller, J.; Khoueiry, P.; Dinkel, H.; Forslund, K.; Stamatakis, A.; Barry, J.; Budd, A.; Soldatos, T.; Linssen, K.; Rajput, A.: Biggest challenges in bioinformatics. EMBO Reports 14 (4), pp. 302 - 304 (2013)
11.
Journal Article
Van Roey, K.; Dinkel, H.; Weatheritt, R.; Gibson, T.; Davey, N.: The switches.ELM Resource: A Compendium of Conditional Regulatory Interaction Interfaces. Science Signaling 6 (269), pp. 1 - 11 (2013)
12.
Journal Article
Weatheritt, R.; Jehl, P.; Dinkel, H.; Gibson, T.: iELM: A web server to explore short linear motif-mediated interactions. Nucleic Acids Research (London) 40 (W1), pp. W364 - W369 (2012)
13.
Journal Article
Davey, N.; Van Roey, K.; Weatheritt, R.; Toedt, G.; Uyar, B.; Altenberg, B.; Budd, A.; Diella, F.; Dinkel, H.; Gibson, T.: Attributes of short linear motifs. Molecular BioSystems 8, pp. 268 - 281 (2012)
14.
Journal Article
Dinkel, H.; Michael, S.; Weatheritt, R.; Davey, N.; Van Roey, K.; Altenberg, B.; Toedt, G.; Uyar, B.; Seiler, M.; Budd, A. et al.; Jödicke, L.; Dammert, M.; Schroeter, C.; Hammer, M.; Schmidt, T.; Jehl, P.; McGuigan, C.; Dymecka, M.; Chica, C.; Luck, K.; Via, A.; Chatr-aryamontri, A.; Haslam, N.; Grebnev, G.; Edwards, R.; Steinmetz, M.; Meiselbach, H.; Diella, F.; Gibson, T.: ELM: the database of eukaryotic linear motifs. Nucleic Acids Research (London) 40 (D1), pp. D242 - D251 (2012)
15.
Journal Article
Dinkel, H.; Chica, C.; Via, A.; Gould, C.; Jensen, L.; Gibson, T.; Diella, F.: Phospho.ELM: a database of phosphorylation sites: update 2011. Nucleic Acids Research (London) 39 (Supplement 1), pp. D261 - D267 (2011)
16.
Journal Article
Sander, G.; Konrad, A.; Thurau, M.; Wies, E.; Leubert, R.; Kremmer, E.; Dinkel, H.; Schulz, T.; Neipel, F.; Stürzl, M.: Intracellular Localization Map of Human Herpesvirus 8 Proteins. Journal of Virology 82 (4), pp. 1908 - 1922 (2008)
17.
Journal Article
Dinkel, H.; Sticht, H.: A computational strategy for the prediction of functional linear peptide motifs in proteins. Bioinformatics 23 (24), pp. 3297 - 3303 (2007)

Book Chapter (1)

18.
Book Chapter
Gouw, M.; Alvarado-Valverde, J.; Čalyševa, J.; Diella, F.; Kumar, M.; Michael, S.; Van Roey, K.; Dinkel, H.; Gibson, T.: How to Annotate and Submit a Short Linear Motif to the Eukaryotic Linear Motif Resource. In: Intrinsically Disordered Proteins: Methods and Protocols, pp. 73 - 102 (Eds. Kragelund, B.; Skriver, K.). Humana, New York, NY, USA (2020)

Talk (10)

19.
Talk
Dinkel, H.: SoftwareCarpentry: Extrakurrikuläre Weiterbildung für den Forscher von heute. FDM-Kompetenzen: Forschungsdaten an den Max-Planck-Instituten (2021)
20.
Talk
Dinkel, H.: Version Control with Git & GitHub. EMBL Course: Computing Skills For Reproducible Research: Software Carpentry - Virtual (2020)
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