Contact

Dr. Oliver Stegle

Address: Spemannstr. 41
72076 Tübingen
Room number: 1.B.01
Fax: +49 7071 601 552

 

Picture of Stegle, Oliver, Dr.

Oliver Stegle

Position: Research Scientist  Unit: 

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Articles (11):

Karaletsos T, Stegle O, Dreyer C, Winn J and Borgwardt KM (April-2012) ShapePheno: Unsupervised extraction of shape phenotypes from biological image collections Bioinformatics 28(7) 1001-1008.
Stegle O, Parts L, Piipari M, Winn J and Durbin R (February-2012) Using probabilistic estimation of expression residuals (PEER) to obtain increased power and interpretability of gene expression analyses Nature Protocols 7(3) 500–507.
Fusi N, Stegle O and Lawrence ND (January-2012) Joint Modelling of Confounding Factors and Prominent Genetic Regulators Provides Increased Accuracy in Genetical Genomics Studies PLoS Computational Biology 8(1) 1-9.
Becker C, Hagmann J, Müller J, Koenig D, Stegle O, Borgwardt K and Weigel D (December-2011) Spontaneous epigenetic variation in the Arabidopsis thaliana methylome Nature 480(7376) 245-249.
Cao J, Schneeberger K, Ossowski S, Günther T, Bender S, Fitz J, Koenig D, Lanz C, Stegle O, Lippert C, Wang X, Ott F, Müller J, Alonso-Blanco C, Borgwardt K, Schmid KJ and Weigel D (October-2011) Whole-genome sequencing of multiple Arabidopsis thaliana populations Nature Genetics 43(10) 956–963.
Gan XC, Stegle O, Behr J, Steffen JG, Drewe P, Hildebrand KL, Lyngsoe R, Schultheiss SJ, Osborne EJ, Sreedharan VT, Kahles A, Bohnert R, Jean G, Derwent P, Kersey P, Belfield EJ, Harberd NP, Kemen E, Toomajian C, Kover PX, Clark RM, Rätsch G and Mott R (September-2011) Multiple reference genomes and transcriptomes for Arabidopsis thaliana Nature 477(7365) 419–423.
Parts L, Stegle O, Winn J and Durbin R (January-2011) Joint Genetic Analysis of Gene Expression Data with Inferred Cellular Phenotypes PLoS Genetics 7(1) 1-10.
Stegle O, Parts L, Durbin R and Winn JM (May-2010) A Bayesian Framework to Account for Complex Non-Genetic Factors in Gene Expression Levels Greatly Increases Power in eQTL Studies PLoS Computational Biology 6(5) 1-11.
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Stegle O, Denby KJ, Cooke EJ, Wild DL, Ghahramani Z and Borgwardt KM (May-2010) A Robust Bayesian Two-Sample Test for Detecting Intervals of Differential Gene Expression in Microarray Time Series Journal of Computational Biology 17(3) 355-367.
Stegle O, Drewe P, Bohnert R, Borgwardt K and Rätsch G (May-2010) Statistical Tests for Detecting Differential RNA-Transcript Expression from Read Counts Nature Precedings 2010 1-11.
Wong HM, Stegle O, Rodgers S and Huppert J (March-2010) A toolbox for predicting G-quadruplex formation and stability Journal of Nucleic Acids 2010(564946) 1-6.

Conference papers (8):

Stegle O, Lippert C, Mooij J, Lawrence N and Borgwardt K (January-2012) Efficient inference in matrix-variate Gaussian models with iid observation noise In: Advances in Neural Information Processing Systems 24, , Twenty-Fifth Annual Conference on Neural Information Processing Systems (NIPS 2011), Curran, Red Hook, NY, USA, 630-638.
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Stegle O, Roth FP, Morris Q and Listgarten J (January-2012) Personalized medicine: from genotypes and molecular phenotypes towards computed therapy, Pacific Symposium on Biocomputing (PSB 2012), World Scientific, Singapore, 323-326.
Janzing D, Sgouritsa E, Stegle O, Peters J and Schölkopf B (July-2011) Detecting low-complexity unobserved causes, 27th Conference on Uncertainty in Artificial Intelligence (UAI 2011), AUAI Press, Corvallis, OR, USA, 383-391.
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Mooij JM, Stegle O, Janzing D, Zhang K and Schölkopf B (June-2011) Probabilistic latent variable models for distinguishing between cause and effect In: Advances in Neural Information Processing Systems 23, , Twenty-Fourth Annual Conference on Neural Information Processing Systems (NIPS 2010), Curran, Red Hook, NY, USA, 1687-1695.
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Rattray M, Stegle O, Sharp K and Winn J (December-2009) Inference algorithms and learning theory for Bayesian sparse factor analysis, International Workshop on Statistical-Mechanical Informatics (IW-SMI 2009), Institute of Physics, Bristol, UK, Journal of Physics: Conference Series, 197(1), 1-10.
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Stegle O, Denby KJ, Wild DL, McHattie S, Mead A, Ghahramani Z and Borgwardt KM (September-2009) Discovering Temporal Patterns of Differential Gene Expression in Microarray Time Series, German Conference on Bioinformatics (GCB 2009), Gesellschaft für Informatik, Bonn, Germany, 133-142.
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Stegle O, Denby K, Wild DL, Ghahramani Z and Borgwardt KM (May-2009) A robust Bayesian two-sample test for detecting intervals of differential gene expression in microarray time series In: Research in Computational Molecular Biology, , 13th Annual International Conference on Research in Computational Molecular Biology (RECOMB 2009), Springer, Berlin, Germany, 201-216, Series: Lecture Notes in Computer Science ; 5541.
Lippert C, Stegle O, Ghahramani Z and Borgwardt KM (April-2009) A kernel method for unsupervised structured network inference, Twelfth International Conference on Artificial Intelligence and Statistics (AISTATS 2009), International Machine Learning Society, Madison, WI, USA, 368-375, Series: JMLR Workshop and Conference Proceedings ; 5.
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Posters (5):

Drewe P, Stegle O, Bohnert R and Borgwardt K (July-2011): Statistical Tests for Detecting Differential RNA-Transcript Expression from Read Counts, 19th Annual International Conference on Intelligent Systems for Molecular Biology and 10th European Conference on Computational Biology (ISMB/ECCB 2011), Wien, Austria.
Drewe P, Stegle O, Bohnert R, Borgwardt KM and Rätsch G (July-2010): Detecting differential RNA-transcript expression, 18th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB 2010), Boston, MA, USA, F1000Posters, 2010(1) 269.
Lippert C, Stegle O, Nickisch H, Borgwardt K and Weigel D (July-2010): Experimental design for genome-wide association studies, 18th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB 2010), Boston, MA, USA, F1000Posters, 2010(1) 324.
Stegle O, Drewe P, Bohnert R, Borgwardt K and Rätsch G (June-2010): Detecting Differential Transcript Expression from RNA-SEQ Experiments, 3rd Berlin Summer Meeting: Computational & Experimental Molecular Biology Meet, Berlin, Germany.
Lippert C, Stegle O, Jegelka S, Altun Y and Borgwardt KM (September-2009): Predicting related traits from SNP markers by multi-task learning, German Conference on Bioinformatics (GCB 2009), Halle, Germany.

Talks (3):

Stegle O (September-2012) Invited Lecture: Exploiting NGS technologies for efficient and accurate genotype to phenotype mapping in plant systems, XVth Meeting of the EUCARPIA Section: Biometrics in Plant Breeding, Stuttgart-Hohenheim, Germany 52.
Stegle O (October-22-2010) Keynote Lecture: Association mapping of complex phenotypes using models at a systems level, Workshop Statistical and Dynamical Models in Biology and Medicine, Heidelberg, Germany.
Stegle O (October-30-2009) Invited Lecture: Association mapping and prediction of complex structured phenotypes, University of Cambridge: Department of Physics, Cambridge, UK.

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Last updated: Monday, 22.05.2017