Contact

Dr. Jakob Macke

Address: Spemannstrasse 41
72074 Tübingen
Room number: 2.B.09
Phone: +49 7071 601 1721
E-Mail: jakob.macke

 

Picture of Macke, Jakob, Dr.

Jakob Macke

Position: Research Group Leader  Unit: Macke

Since 05/2012: Junior research group leader, MPI for Biological Cybernetics and Bernstein Center for Computational Neuroscience

04/2010-04/2012: Postdoc at the Gatsby Computational Neuroscience Unit, University College London, UK

10/2005-04/2010: PhD student, MPI for Biological Cybernetics

06/2005: Master in Mathematics, University of Oxford, UK

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Articles (20):

Panzeri S Person, Macke JH Person, Gross J and Kayser C Person (March-2015) Neural population coding: combining insights from microscopic and mass signals Trends in Cognitive Sciences 19(3) 162–172.
Küffner R , Zach N , Norel R , Hawe J , Schoenfeld D , Wang L , Li G , Fang L , Mackey L , Hardiman O , Cudkowicz M , Sherman A , Ertaylan G , Grosse-Wentrup M Person, Hothorn T , van Ligtenberg J , Macke JH Person, Meyer T , Schölkopf B Person, Tran L , Vaughan R , Stolovitzky G and Leitner ML (January-2015) Crowdsourced analysis of clinical trial data to predict amyotrophic lateral sclerosis progression Nature Biotechnology 33(1) 51-57.
Park M and Macke JH Person (January-2015) Hierarchical models for neural population dynamics in the presence of non-stationarity Machine Learning . submitted
Fründ I , Wichmann FA Person and Macke J Person (June-2014) Quantifying the effect of intertrial dependence on perceptual decisions Journal of Vision 14(7:9) 1-16.
Watanabe M Person, Bartels A Person, Macke JH Person, Murayama Y Person and Logothetis NK Person (November-2013) Temporal Jitter of the BOLD Signal Reveals a Reliable Initial Dip and Improved Spatial Resolution Current Biology 23(21) 2146–2150.
Macke JH Person, Murray I Person and Latham PE (August-2013) Estimation bias in maximum entropy models Entropy 15(8) 3109-3219.
Haefner RM Person, Gerwinn S Person, Macke JH Person and Bethge M Person (February-2013) Inferring decoding strategies from choice probabilities in the presence of correlated variability Nature Neuroscience 16(2) 235–242.
Schwartz G , Macke J Person, Amodei D , Tang H and Berry MJ (August-2012) Low Error Discrimination using a Correlated Population Code Journal of Neurophysiology 108(4) 1069-1088.
Buesing L , Macke JH Person and Sahani M (March-2012) Learning stable, regularised latent models of neural population dynamics Network 23(1-2) 24-47.
Macke J Person, Berens P Person and Bethge M Person (July-2011) Statistical analysis of multi-cell recordings: linking population coding models to experimental data Frontiers in Computational Neuroscience 5(35) 1-2.
Macke JH Person, Opper M and Bethge M Person (May-2011) Common Input Explains Higher-Order Correlations and Entropy in a Simple Model of Neural Population Activity Physical Review Letters 106(20) 1-4.
Macke JH Person, Gerwinn S Person, White LW , Kaschube M and Bethge M Person (May-2011) Gaussian process methods for estimating cortical maps NeuroImage 56(2) 570-581.
Gerwinn S Person, Macke JH Person and Bethge M Person (February-2011) Reconstructing stimuli from the spike-times of leaky integrate and fire neurons Frontiers in Neuroscience 5(1) 1-16.
Lyamzin DR , Macke JH Person and Lesica NA (October-2010) Modeling population spike trains with specified time-varying spike rates, trial-to-trial variability, and pairwise signal and noise correlations Frontiers in Computational Neuroscience 4(144) 1-11.
Macke JH Person and Wichmann FA Person (May-2010) Estimating predictive stimulus features from psychophysical data: The decision image technique applied to human faces Journal of Vision 10(5:22) 1-24.
Gerwinn S Person, Macke J Person and Bethge M Person (April-2010) Bayesian inference for generalized linear models for spiking neurons Frontiers in Computational Neuroscience 4(12) 1-17.
Gerwinn S Person, Macke JH Person and Bethge M Person (October-2009) Bayesian population decoding of spiking neurons Frontiers in Computational Neuroscience 3(21) 1-14.
Macke JH Person, Berens P Person, Ecker AS Person, Tolias AS Person and Bethge M Person (February-2009) Generating Spike Trains with Specified Correlation Coefficients Neural Computation 21(2) 397-423.
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Ku S-P Person, Gretton A Person, Macke J Person and Logothetis NK Person (September-2008) Comparison of Pattern Recognition Methods in Classifying High-resolution BOLD Signals Obtained at High Magnetic Field in Monkeys Magnetic Resonance Imaging 26(7) 1007-1014.
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Macke JH Person, Maack N , Gupta R , Denk W , Schölkopf B Person and Borst A (January-2008) Contour-propagation Algorithms for Semi-automated Reconstruction of Neural Processes Journal of Neuroscience Methods 167(2) 349-357.
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Conference papers (11):

Putzky P Person, Franzen F Person, Bassetto G Person and Macke JH Person (December-2014) A Bayesian model for identifying hierarchically organised states in neural population activity In: Advances in Neural Information Processing Systems 27, Twenty-Eighth Annual Conference on Neural Information Processing Systems (NIPS 2014), 3095-3103.
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Archer EW Person, Koster U , Pillow JW and Macke JH Person (December-2014) Low-dimensional models of neural population activity in sensory cortical circuits In: Advances in Neural Information Processing Systems 27, Twenty-Eighth Annual Conference on Neural Information Processing Systems (NIPS 2014), 343-351.
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Turaga SC , Buesing L , Packer AM , Dalgleish H , Pettit N , Hausser M and Macke JH Person (2014) Inferring neural population dynamics from multiple partial recordings of the same neural circuit In: Advances in Neural Information Processing Systems 26, Twenty-Seventh Annual Conference on Neural Information Processing Systems (NIPS 2013), Curran, Red Hook, NY, USA, 539-547.
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Buesing L , Macke JH Person and Sahani M (April-2013) Spectral learning of linear dynamics from generalised-linear observations with application to neural population data In: Advances in Neural Information Processing Systems 25, Twenty-Sixth Annual Conference on Neural Information Processing Systems (NIPS 2012), Curran, Red Hook, NY, USA, 1691-1699.
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Macke JH Person, Büsing L , Cunningham JP , Yu BM , Shenoy KV and Sahani M (January-2012) Empirical models of spiking in neural populations In: Advances in Neural Information Processing Systems 24, Twenty-Fifth Annual Conference on Neural Information Processing Systems (NIPS 2011), Curran, Red Hook, NY, USA, 1350-1358.
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Macke JH Person, Murray I and Latham P (January-2012) How biased are maximum entropy models? In: Advances in Neural Information Processing Systems 24, Twenty-Fifth Annual Conference on Neural Information Processing Systems (NIPS 2011), Curran, Red Hook, NY, USA, 2034-2042.
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Macke JH Person, Gerwinn S Person, Kaschube M , White LE and Bethge M Person (April-2010) Bayesian estimation of orientation preference maps In: Advances in Neural Information Processing Systems 22, 23rd Annual Conference on Neural Information Processing Systems (NIPS 2009), Curran, Red Hook, NY, USA, 1195-1203.
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Gerwinn S Person, Macke J Person, Seeger M Person and Bethge M Person (September-2008) Bayesian Inference for Spiking Neuron Models with a Sparsity Prior In: Advances in neural information processing systems 20, Twenty-First Annual Conference on Neural Information Processing Systems (NIPS 2007), Curran, Red Hook, NY, USA, 529-536.
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Macke JH Person, Zeck G Person and Bethge M Person (September-2008) Receptive Fields without Spike-Triggering In: Advances in neural information processing systems 20, Twenty-First Annual Conference on Neural Information Processing Systems (NIPS 2007), Curran, Red Hook, NY, USA, 969-976.
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Laub J , Macke JH Person, Müller K-R Person and Wichmann FA Person (September-2007) Inducing Metric Violations in Human Similarity Judgements In: Advances in Neural Information Processing Systems 19, Twentieth Annual Conference on Neural Information Processing Systems (NIPS 2006), MIT Press, Cambridge, MA, USA, 777-784.
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Bethge M Person, Gerwinn S Person and Macke JH Person (February-2007) Unsupervised learning of a steerable basis for invariant image representations In: Human Vision and Electronic Imaging XII, SPIE Human Vision and Electronic Imaging Conference 2007, SPIE, Bellingham, WA, USA, 1-12.
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Contributions to books (2):

Macke JH Person, Buesing L and Sahani M : Estimating State and Parameters in State Space Models of Spike Trains, -. In: Advanced State Space Methods for Neural and Clinical Data, (Ed) Z. Chen, Cambridge University Press, Cambridge, UK, (October-2015). in press
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Macke JH Person: Electrophysiology Analysis, Bayesian, 1078-1082. In: Encyclopedia of Computational Neuroscience, (Ed) D. Jaeger, Springer, New York, NY, USA, (2015).
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Technical reports (1):

Macke JH Person, Opper M and Bethge M Person: The effect of pairwise neural correlations on global population statistics, 183, Max Planck Institute for Biological Cybernetics, Tübingen, Germany, (March-2009).
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Posters (35):

Schütt H , Harmeling S Person, Macke J Person and Wichmann F Person (May-17-2015): Psignifit 4: Pain-free Bayesian Inference for Psychometric Functions, 15th Annual Meeting of the Vision Sciences Society (VSS 2015), St. Pete's Beach, FL, USA.
Nonnenmacher M Person, Behrens C , Berens P Person, Bethge M Person and Macke J Person (March-7-2015): Correlations and signatures of criticality in neural population models, Computational and Systems Neuroscience Meeting (COSYNE 2015), Salt Lake City, UT, USA.
Nienborg H and Macke JH Person (November-17-2014): Using sequential dependencies in neural activity and behavior to dissect choice related activity in V2, 44th Annual Meeting of the Society for Neuroscience (Neuroscience 2014), Washington, DC, USA.
Archer E Person, Pillow J and Macke J Person (October-2014): Low Dimensional Dynamical Models of Neural Populations with Common Input, 15th Conference of Junior Neuroscientists of Tübingen (NeNa 2014), Schramberg, Germany.
Archer E Person, Pillow JW and Macke JH Person (September-3-2014): Low-dimensional dynamical neural population models with shared stimulus drive, Bernstein Conference 2014, Göttingen, Germany.
Nienborg H and Macke JH Person (September-3-2014): Using sequential dependencies in neural activity and behavior to dissect choice related activity in V2, Bernstein Conference 2014, Göttingen, Germany.
Schütt H , Harmeling S Person, Macke J Person and Wichmann F Person (August-27-2014): Pain-free bayesian inference for psychometric functions, 37th European Conference on Visual Perception (ECVP 2014), Beograd, Serbia, Perception, 43(ECVP Abstract Supplement) 162.
Schütt H , Harmeling S Person, Macke J Person and Wichmann F Person (August-2014): Pain-free Bayesian inference for psychometric functions, 2014 European Mathematical Psychology Group Meeting (EMPG), Tübingen, Germany.
Archer E Person, Pillow JW and Macke J Person (March-2014): Low-dimensional models of neural population recordings with complex stimulus selectivity, Computational and Systems Neuroscience Meeting (COSYNE 2014), Salt Lake City, UT, USA.
Turaga SC , Buesing L , Packer A , Dalgleish H , Pettit N , Hauser M and Macke J Person (March-2014): Predicting noise correlations for non-simultaneously measured neuron pairs, Computational and Systems Neuroscience Meeting (COSYNE 2014), Salt Lake City, UT, USA.
Turaga SC , Buesing L , Packer M , Hausser M and Macke JH Person (November-13-2013): Inferring interactions between cell types from multiple calcium imaging snapshots of the same neural circuit, 43rd Annual Meeting of the Society for Neuroscience (Neuroscience 2013), San Diego, CA, USA.
Macke J Person, Murray I Person and Latham P (March-2013): How biased are maximum entropy models of neural population activity?, Computational and Systems Neuroscience Meeting (COSYNE 2013), Salt Lake City, UT, USA.
Buesing L , Macke J Person and Sahani M (March-2013): Robust estimation for neural state-space models, Computational and Systems Neuroscience Meeting (COSYNE 2013), Salt Lake City, UT, USA.
Macke JH Person, Büsing L , Cunningham JP , Yu BM , Shenoy KV and Sahani M (May-2012): Empirical models of spiking in neural populations, Janelia Farm Conference 2012: Machine Learning, Statistical Inference, and Neuroscience, Ashburn, VA, USA.
Haefner RM Person, Gerwinn S Person, Macke JH Person and Bethge M Person (November-2011): Relationship between decoding strategy, choice probabilities and neural correlations in perceptual decision-making task, 41st Annual Meeting of the Society for Neuroscience (Neuroscience 2011), Washington, DC, USA.
Macke JH Person, Büsing L , Cunningham JP , Yu BM , Shenoy KV and Sahani M (February-2011): Modelling low-dimensional dynamics in recorded spiking populations, Computational and Systems Neuroscience Meeting (COSYNE 2011), Salt Lake City, UT, USA.
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Last updated: Tuesday, 18.11.2014