Contact

Michael Habeck

Address: Spemannstr. 38
72076 Tübingen
Room number: 224
Fax: +49 7071 601 552

 

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Michael Habeck

Position: Research Group Leader  Unit: 

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Articles (35):

Anger AM, Armache J-P, Berninghausen O, Habeck M, Subklewe M, Wilson DN and Beckmann R (May-2013) Structures of the human and Drosophila 80S ribosome Nature 497(7447) 80-85.
Kalev I and Habeck M (November-2011) HHfrag: HMM-based fragment detection using HHpred Bioinformatics 27(22) 3110-3116.
Hirsch M, Schölkopf B and Habeck M (March-2011) A Blind Deconvolution Approach for Improving the Resolution of Cryo-EM Density Maps Journal of Computational Biology 18(3) 335-346.
Habeck M and Nilges M (March-2011) Combining computational modeling with sparse and low-resolution data Journal of Structural Biology 173(3) 419.
Habeck M (March-2011) Statistical mechanics analysis of sparse data Journal of Structural Biology 173(3) 541-548.
Armache J-P, Jarasch A, Anger AM, Villa E, Becker T, Bhushan S, Jossinet F, Habeck M, Dindar G, Franckenberg S, Marquez V, Mielke T, Thomm M, Berninghausen O, Beatrix B, Söding J, Westhof E, Wilson DN and Beckmann R (November-2010) Cryo-EM structure and rRNA model of a translating eukaryotic 80S ribosome at 5.5-Å resolution Proceedings of the National Academy of Sciences of the United States of America 107(46) 19748-19753.
Armache J-P, Jarasch A, Anger AM, Villa E, Becker T, Bhushan S, Jossinet F, Habeck M, Dindar G, Franckenberg S, Marquez V, Mielke T, Thomm M, Berninghausen O, Beatrix B, Söding J, Westhof E, Wilson DN and Beckmann R (November-2010) Localization of eukaryote-specific ribosomal proteins in a 5.5-Å cryo-EM map of the 80S eukaryotic ribosome Proceedings of the National Academy of Sciences of the United States of America 107(46) 19754-19759.
Mechelke M and Habeck M (July-2010) Robust probabilistic superposition and comparison of protein structures BMC Bioinformatics 11(363) 1-13.
Habeck M (December-2009) Generation of three-dimensional random rotations in fitting and matching problems Computational Statistics 24(4) 719-731.
Alva V, Dunin-Horkawicz S, Habeck M, Coles M and Lupas AN (July-2009) The GD box: A widespread non-contiguous supersecondary structural element Protein Science 18(9) 1961-1966.
Djuranovic S, Hartmann MD, Habeck M, Ursinus A, Zwickl P, Martin J, Lupas AN and Zeth K (June-2009) Structure and Activity of the N-Terminal Substrate Recognition Domains in Proteasomal ATPases Molecular Cell 34(5) 580-590.
Bardiaux B, Bernard A, Rieping W, Habeck M, Malliavin TE and Nilges M (May-2009) Influence of Different Assignment Conditions on the Determination of Symmetric Homo-dimeric Structures with ARIA Proteins 75(3) 569-585.
Hirsch M and Habeck M (October-2008) Mixture Models for Protein Structure Ensembles Bioinformatics 24(19) 2184-2192.
Bayrhuber M, Meins T, Habeck M, Becker S, Giller K, Villinger S, Vonrhein C, Griesinger C, Zweckstetter M and Zeth K (October-2008) Structure of the human voltage-dependent anion channel Proceedings of the National Academy of Sciences of the United States of America 105(40) 15370-15375.
Nilges M, Bernard A, Bardiaux B, Malliavin T, Habeck M and Rieping W (September-2008) Accurate NMR Structures Through Minimization of an Extended Hybrid Energy Structure 16(9) 1305-1312.
Bardiaux B, Bernard A, Rieping W, Habeck M, Malliavin T and Nilges M (June-2008) Graphical Analysis of NMR Structural Quality and Interactive Contact Map of NOE Assignments in ARIA BMC Structural Biology 8(30) 1-5.
Habeck M, Nilges M and Rieping W (February-2008) A Unifying Probabilistic Framework for Analyzing Residual Dipolar Couplings Journal of Biomolecular NMR 40(2) 135-144.
Wolff N, Izadi-Pruneyre N, Scholes J, Habeck M, Linge J, Rieping W, Wandersman C, Nilges M, Delepierre M and Lecroisey A (February-2008) Comparative Analysis of Structural and Dynamic Properties of the Loaded and Unloaded Hemophore HasA: Functional Implications Journal of Molecular Biology 376(2) 517-525.
Rieping W, Nilges M and Habeck M (February-2008) ISD: A Software Package for Bayesian NMR Structure Calculation Bioinformatics 24(8) 1104-1105.
Nilges M, Habeck M and Rieping W (February-2008) Probabilistic Structure Calculation Comptes Rendus Chimie 11(4-5) 356-369.
Habeck M (May-2007) Bayesian Reconstruction of the Density of States Physical Review Letters 98(20, 200601) 1-4.
Rieping W, Habeck M, Bardiaux B, Bernard A, Malliavin TE and Nilges M (February-2007) ARIA2: automated NOE assignment and data integration in NMR structure calculation Bioinformatics 23(3) 381-382.
Nicastro G, Habeck M, Masino L, Svergun DI and Pastore A (December-2006) Structure validation of the Josephin domain of ataxin-3: Conclusive evidence for an open conformation Journal of Biomolecular NMR 36(4) 267-277.
AB E, Atkinson A, Banci L, Bertini I, Ciofi-Baffoni S, Brunner K, Diercks T, Dotsch V, Engelke F, Folkers GE, Griesinger C, Gronwald W, Gunther U, Habeck M, de Jong RN, Kalbitzer HR, Kieffer B, Leeflang BR, Loss S, Luchinat C and Marquardsen T (October-2006) NMR in the SPINE Structural Proteomics project Acta Crystallographica D: Biological Crystallography 62(10) 1150-1161.
Nilges M, Habeck M, Zdravković Si and Rieping W (July-2006) Error distribution derived NOE distance restraints Proteins 64(3) 652-664.
Habeck M, Rieping W and Nilges M (February-2006) Weighting of experimental evidence in macromolecular structure determination Proceedings of the National Academy of Sciences of the United States of America 103(6) 1756-1761.
Rieping W, Habeck M and Nilges M (November-23-2005) Modeling Errors in NOE Data with a Log-normal Distribution Improves the Quality of NMR Structures J. Am. Chem. Soc. 127 16026-16027.
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Habeck M, Rieping W and Nilges M (November-2005) Bayesian estimation of Karplus parameters and torsion angles from three-bond scalar couplings constants Journal of Magnetic Resonance 177(1) 160-165.
Habeck M, Nilges M and Rieping W (September-2005) Bayesian inference applied to macromolecular structure determination Physical Review E 72(3,1) 031912-031912.
Rieping W, Habeck M and Nilges M (July-8-2005) Inferential structure determination. Science 309 303.
Habeck M, Nilges M and Rieping W (January-14-2005) Replica-exchange Monte Carlo scheme for bayesian data analysis. Phys Rev Lett. 94 018105-018105.
Linge JP, Habeck M, Rieping W and Nilges M (April-2004) Correction of spin diffusion during iterative automated NOE assignment. J Magn Reson. 167 334.
Linge JP, Habeck M, Rieping W and Nilges M (January-2004) ARIA: automated NOE assignment and NMR structure calculation. Bioinformatics 19 315.
Fogh R, Ionides J, Ulrich E, Boucher W, Vranken W, Linge JP, Habeck M, Rieping W, Bhat TN, Westbrook J, Hendrik K, Gilliland G, Berman H, Thornton J, Nilges M, Markley J and Laue E (June-2002) The CCPN project: an interim report on a data model for the NMR community. Nat Struct Biol. 9 416.
Muhle-Goll C, Habeck M, Carzola O, Nilges M, Labeit S and Granzier H (October-2001) Structural and functional studies of titin‘s fn3 modules reveal conserved surface patterns and binding to myosin S1--a possible role in the Frank-Starling mechanism of the heart. J Mol Biol. 313 431.

Conference papers (9):

Habeck M (April-2012) Evaluation of marginal likelihoods via the density of states, Fifteenth International Conference on Artificial Intelligence and Statistics (AISTATS 2012), International Machine Learning Society, Madison, WI, USA, 486-494, Series: JMLR Workshop and Conference Proceedings ; 22.
Joubert P, Nickell S, Beck F, Habeck M, Hirsch M and Schölkopf B (September-2011) Automatic particle picking using diffusion filtering and random forest classification, International Workshop on Microscopic Image Analysis with Application in Biology (MIAAB 2011), 1-6.
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Langovoy M, Habeck M and Schölkopf B (August-2011) Adaptive nonparametric detection in cryo-electron microscopy, 58th World Statistics Congress of the International Statistical Institute (ISI 2011), 1-6.
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Langovoy M, Habeck M and Schölkopf B (August-2011) Spatial statistics, image analysis and percolation theory, 2011 Joint Statistical Meetings (JSM), American Statistical Association, Alexandria, VA, USA, 1-11.
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Hirsch M, Schölkopf B and Habeck M (April-2010) A New Algorithm for Improving the Resolution of Cryo-EM Density Maps In: Research in Computational Molecular Biology, , 14th International Conference on Research in Computational Molecular Biology (RECOMB 2010), Springer, Berlin, Germany, 174-188, Series: Lecture Notes in Computer Science ; 6044.
Rieping W, Habeck M and Nilges M (2007) Probabilistic Structure Calculation In: Structure and Biophysics: New Technologies for Current Challenges in Biology and Beyond, , NATO Advanced Study Institute (ASI) on Structure and Biophysics - New Technologies for Current Challenges in Biology and Beyond 2005, Springer, Dordrecht, The Netherlands, 81-98, Series: NATO Science Series.
Habeck M, Rieping W and Nilges M (July-2004) Estimation of proton configurations from NOESY spectra, 24th International Workshop on Bayesian Inference and Maximum Entropy Methods in Science and Engineering 2004, American Institute of Physics, Melville, NY, USA, 119-126, Series: AIP Conference Proceedings ; 735.
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Rieping W, Habeck M and Nilges M (July-2004) Structure determination from heterogeneous NMR data, 24th International Workshop on Bayesian Inference and Maximum Entropy Methods in Science and Engineering 2004, American Institute of Physics, Melville, NY, USA, 268-275, Series: AIP Conference Proceedings ; 735.
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Habeck M, Rieping W and Nilges M (April-2004) A new principle for macromolecular structure determination, 23rd International Workshop on Bayesian Inference and Maximum Entropy Methods in Science and Engineering 2003, American Institute of Physics, Melville, NY, USA, 157-166, Series: AIP Conference Proceedings ; 707.
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Contributions to books (2):

Nilges M, Markwick P, Malliavin TE, Rieping W and Habeck M: New Frontiers in Characterizing Structure and Dynamics by NMR, 655-680. In: Computational Structural Biology: Methods and Applications, (Ed) T. Schwede, World Scientific, New Jersey, NJ, USA, (May-2008).
Habeck M, Rieping W, Linge JP and Nilges M: NOE assignment with ARIA 2.0: the nuts and bolts., 379-402. In: Protein NMR Techniques, , Humana Press, Totowa, NJ 07512, USA, (August-2004).

Posters (1):

Bayrhuber MA, Meins T, Habeck M, Vonrhein C, Vijayan V, Villinger S and Becker S (April-2009): Structure of the Human Voltage Dependent Anion Channel and Its Potential Role in Apoptosis, 50th Experimental Nuclear Magnetic Resonance Conference (ENC 2009), Santa Fe, NM, USA.

Theses (1):

Habeck M: Rekonstruktion von Proteinstrukturen aus unvollständigen NMR-Daten, Universitaet Regensburg, Germany, (December-2004). PhD thesis

Talks (7):

Langovoy M, Habeck M and Schölkopf B (August-2011) Abstract Talk: Statistical Image Analysis and Percolation Theory, 2011 Joint Statistical Meetings (JSM), Miami Beach, FL, USA.
Habeck M (April-2008) Invited Lecture: Bayesian methods for protein structure determination, Machine Learning in Structural Bioinformatics (MLSB '08), Copenhagen, Denmark.
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Last updated: Monday, 22.05.2017