Event Calendar:

June 2013
Mo Tu We Th Fr Sa Su
22 27 28 29 30 31 01 02
23 03 04 05 06 07 08 09
24 10 11 12 13 14 15 16
25 17 18 19 20 21 22 23
26 24 25 26 27 28 29 30

» All Events

Quick Links

Research Group Leader

Prof. Dr. Matthias Bethge
Prof. Dr. Matthias Bethge
Phone: +49 7071 29-89017
Fax: +49 7071 29-25015
mbethge[at]tuebingen.mpg.de

 

Secretary: Heike König
Phone: +49 7071 29-89018
Fax: +49 7071 29-25015
heike.koenig[at]tuebingen.mpg.de
 

 

Toolbox for inference in generalized linear models for spiking neurons.

Description
GLMToolBox

Provides a toolbox for doing inference in generalized linear models
for spiking neurons. This includes calculating MAP estimates for L1
and L2 priors as well as approximations to the posterior moments based
on the Expectation Propagation algorithm.





INSTALLATION

a) Make sure the MinFunc toolbox is installed. Available at
http://www.cs.ubc.ca/~schmidtm/Software/minFunc.html
http://www.cs.ubc.ca/~schmidtm/Software/minFunc_20090930.zip

b) Install the lightspeed toolbox. (actually only normcdfln.m is needed)
http://research.microsoft.com/en-us/um/people/minka/software/lightspeed/

c) Unpack the archive: 'tar -xvzf glmToolBox.tar.gz'

d) If necessary, compile the mex-code. Compiled versions for Windows (32bit)
and Linux (64bit) are contained in the archive.
cd ./GLMToolBox/code/mexCode/
make install




USAGE:

a) execute adjustPath from the main-directory before using any of the code.
b) See examples for basic usage. Scripts are located in < main-directory > /exampleScripts/




LICENSE

The code is published under the GNU Gneral Public License
(http://www.opensource.org/licenses/gpl-3.0.html).
The code is provided "as it" and has no warranty whatsoever.
Download
glmtoolbox.zip (294 KB)
Last updated: Wednesday, 27.02.2013